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Yi Xiong

Research Associate Professor / Associate Researcher

  • Tel: +86-021-34204573
  • Email: xiongyi@sjtu.edu.cn
  • Address: RM 4-323A, Life Science Building
  • Lab Web: http://xbioinfo.sjtu.edu.cn

Education and Research Experience

  • Dec 2018 –                   Department of Bioinformatics and Biostatistics, Shanghai Jiao Tong University, China     Associate Professor (Research)                                                               
  • Jan 2014 –Dec 2018     Department of Bioinformatics and Biostatistics, Shanghai Jiao Tong University, China     Assistant Professor (Research)                                                                       
  • Jan 2012 –Dec 2013     Department of Biological Sciences, Purdue University, West Lafayette, IN, US                  Postdoctoral Research Associate                                                   

Selected Publications

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    Yanyi Chu, Aman Chandra Kaushik, Xiangeng Wang, Wei Wang, Yufang Zhang, Xiaoqi Shan, Dennis Russell Salahub, Yi Xiong*, Dong-Qing Wei*. (2019) DTI-CDF: a Cascade Deep Forest Model Towards The Prediction of Drug-Target Interactions Based on Hybrid Features. Brief. Bioinform.  doi:10.1093/bib/bbz152 (2018 IF: 9.101)

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    Xiaoqi Shan, Xiangeng Wang, Cheng-Dong Li, Yanyi Chu, Yufang Zhang, Yi Xiong*, Dong-Qing Wei*. (2019) Prediction of CYP450 Enzyme-Substrate Selectivity Based on the Network-Based Label Space Division Method. J. Chem. Inf. Model.  59:4577-4586 (2018 IF: 3.966)

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    Xiaolei Zhu†, Jingjing He†, Shihao Zhao†, Wei Tao, Yi Xiong*, Shoudong Bi*. (2019) A Comprehensive Comparison and Analysis of Computational Predictors for RNA N6-Methyladenosine Sites of Saccharomyces Cerevisiae. Brief. Funct. Genomics 18(6):367-376 (2018 IF: 3.133)

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    Ronghui You, Shuwei Yao, Yi Xiong, Xiaodi Huang, Fengzhu Sun, Hiroshi Mamitsuka, Shanfeng Zhu*. (2019) NetGO: Improving Large-scale Protein Function Prediction with Massive Network Information. Nucleic Acids Res.  47:W379–W387(2018 IF: 11.147)

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    Yi Xiong, Qiankun Wang, Junchen Yang, Xiaolei Zhu*, Dong-Qing Wei*. (2018) PredT4SE-Stack: Prediction of Bacterial Type IV Secreted Effectors from Protein Sequences using a Stacked Ensemble Method. Front. Microbiol.  9: 2571. (2018 IF: 4.259)

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    Ling Liu†, Yi Xiong†, Hongyun Gao, Dong-Qing Wei, Julie C Mitchell*, Xiaolei Zhu*. (2018) dbAMEPNI: a Database of Alanine Mutagenic Effects for Protein-Nucleic Acid Interactions. Database  (2018 IF: 3.683) (Co-first authors)

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    Jingjing He, Ting Fang, Zizheng Zhang, Bei Huang, Xiaolei Zhu*, Yi Xiong*. (2018) PseUI: Pseudouridine Sites Identification based on RNA Sequence Information. BMC Bioinformatics 19:306. (2018 IF: 2.511)

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    Qian Xu, Yi Xiong*, Hao Dai, Kotni Meena Kumari, Qin Xu, Hong-Yu Ou, Dong-Qing Wei. (2017) PDC-SGB: Prediction of Effective Drug Combinations using a Stochastic Gradient Boosting Algorithm. J. Theor. Biol. 417:1-7. (2017 IF: 1.833)

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    Xiaolei Zhu, Yi Xiong, Daisuke Kihara*. (2015) Large-Scale Binding Ligand Prediction by Improved Patch-based Method Patch-Surfer2.0. Bioinformatics 31(5):707-713. (2015 IF: 5.766)

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    Uma K. Aryal, Yi Xiong, Zachary McBride, Daisuke Kihara, Jun Xie, Mark C. Hall, Daniel B. Szymanski*. (2014) A Proteomic Strategy for Global Analysis of Plant Protein Complexes. Plant Cell 26:3867-3882. (2014 IF: 9.338)